Package edu.duke.cs.osprey.markstar

Class MARKStar.Settings.Builder

java.lang.Object

edu.duke.cs.osprey.markstar.MARKStar.Settings.Builder

Enclosing class:

MARKStar.Settings

public static class MARKStar.Settings.Builder
extends Object

Constructor Summary

Constructors

Constructor	Description
Builder()

Method Summary

Modifier and Type	Method	Description
MARKStar.Settings.Builder	addScoreConsoleWriter()
MARKStar.Settings.Builder	addScoreConsoleWriter(KStarScoreWriter.Formatter val)
MARKStar.Settings.Builder	addScoreFileWriter(File file)
MARKStar.Settings.Builder	addScoreFileWriter(File file, KStarScoreWriter.Formatter val)
MARKStar.Settings.Builder	addScoreWriter(KStarScoreWriter val)
MARKStar.Settings	build()
MARKStar.Settings.Builder	setEnergyMatrixCachePattern(String val)
MARKStar.Settings.Builder	setEpsilon(double val)
MARKStar.Settings.Builder	setMaxNumConfs(int maxNumConfs)
MARKStar.Settings.Builder	setMaxSimultaneousMutations(int val)
MARKStar.Settings.Builder	setParallelism(Parallelism p)
MARKStar.Settings.Builder	setReduceMinimizations(boolean reudceMinimizations)
MARKStar.Settings.Builder	setShowPfuncProgress(boolean val)
MARKStar.Settings.Builder	setStabilityThreshold(Double val)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Builder

public Builder()

Method Details

setEpsilon

public MARKStar.Settings.Builder setEpsilon(double val)

setStabilityThreshold

public MARKStar.Settings.Builder setStabilityThreshold(Double val)

setMaxSimultaneousMutations

public MARKStar.Settings.Builder setMaxSimultaneousMutations(int val)

addScoreWriter

public MARKStar.Settings.Builder addScoreWriter(KStarScoreWriter val)

addScoreConsoleWriter

public MARKStar.Settings.Builder addScoreConsoleWriter(KStarScoreWriter.Formatter val)

addScoreConsoleWriter

public MARKStar.Settings.Builder addScoreConsoleWriter()

addScoreFileWriter

public MARKStar.Settings.Builder addScoreFileWriter(File file,
 KStarScoreWriter.Formatter val)

addScoreFileWriter

public MARKStar.Settings.Builder addScoreFileWriter(File file)

setShowPfuncProgress

public MARKStar.Settings.Builder setShowPfuncProgress(boolean val)

setEnergyMatrixCachePattern

public MARKStar.Settings.Builder setEnergyMatrixCachePattern(String val)

setParallelism

public MARKStar.Settings.Builder setParallelism(Parallelism p)

setMaxNumConfs

public MARKStar.Settings.Builder setMaxNumConfs(int maxNumConfs)

build

public MARKStar.Settings build()

setReduceMinimizations

public MARKStar.Settings.Builder setReduceMinimizations(boolean reudceMinimizations)