Package edu.duke.cs.osprey.astar.conf

Class RCs

java.lang.Object

edu.duke.cs.osprey.astar.conf.RCs

public class RCs
extends Object

Constructor Summary

Constructors

Constructor	Description
RCs(int[][] rcsAtPos)
RCs(RCs other)
RCs(RCs other, PruningMatrix pmat)
RCs(RCs other, BiPredicate<Integer,Integer> filter)
RCs(ConfSpaceIteration confSpace)
RCs(ConfSpaceIteration confSpace, BiPredicate<Integer,Integer> filter)
RCs(SimpleConfSpace confSpace)	Deprecated.
RCs(SimpleConfSpace confSpace, BiPredicate<SimpleConfSpace.Position,SimpleConfSpace.ResidueConf> filter)	Deprecated.
RCs(PruningMatrix pruneMat)
RCs(List<List<Integer>> rcsAtPos)

Method Summary

Modifier and Type	Method	Description
boolean	contains(int pos, int rc)
int[]	get(int pos)
int	get(int pos, int rci)
int	getNum(int pos)
BigInteger	getNumConformations()	Counts the number of full conformations in the conformation space.
int	getNumPos()
int	getNumTrivialPos()
PruningMatrix	getPruneMat()
boolean	hasConfs()
void	set(int pos, int[] rcs)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

RCs

@Deprecated
public RCs(SimpleConfSpace confSpace)

Deprecated.

use the ConfSpaceIteration constructors instead

RCs

@Deprecated
public RCs(SimpleConfSpace confSpace,
 BiPredicate<SimpleConfSpace.Position,SimpleConfSpace.ResidueConf> filter)

Deprecated.

use the ConfSpaceIteration constructors instead

RCs

public RCs(ConfSpaceIteration confSpace)

RCs

public RCs(ConfSpaceIteration confSpace,
 BiPredicate<Integer,Integer> filter)

RCs

public RCs(List<List<Integer>> rcsAtPos)

RCs

public RCs(int[][] rcsAtPos)

RCs

public RCs(PruningMatrix pruneMat)

RCs

public RCs(RCs other,
 PruningMatrix pmat)

RCs

public RCs(RCs other)

RCs

public RCs(RCs other,
 BiPredicate<Integer,Integer> filter)

Method Details

getPruneMat

public PruningMatrix getPruneMat()

hasConfs

public boolean hasConfs()

getNumPos

public int getNumPos()

getNumTrivialPos

public int getNumTrivialPos()

getNumConformations

public BigInteger getNumConformations()

Counts the number of full conformations in the conformation space. The count ignores conformations disallowed by pruned RC singles, but conformations disallowed by pruned RC pairs are still counted.

get

public int[] get(int pos)

set

public void set(int pos,
 int[] rcs)

getNum

public int getNum(int pos)

get

public int get(int pos,
 int rci)

contains

public boolean contains(int pos,
 int rc)

toString

public String toString()

Overrides:

toString in class Object