RdcPanda
Class SSEPacking

java.lang.Object
  extended by RdcPanda.SSEPacking

public class SSEPacking
extends java.lang.Object

This class provides functions for packing SSE fragments. Written by Jianyang (Michael) Zeng (2005-2009).


Nested Class Summary
static class SSEPacking.SSEPackingComparator
          The Class SSEPackingComparator.
 
Constructor Summary
SSEPacking()
          Instantiates a new sSE packing.
SSEPacking(double dbT, double dbP, double dbR, double dbS)
          Instantiates a new sSE packing.
 
Method Summary
 double getLengthR()
          Gets the length r.
 double getPhi()
          Gets the phi.
 double getScore()
          Gets the score.
 double getTheta()
          Gets the theta.
static void main1(java.lang.String[] argv)
          Main function for testing.
static void PackingHelicesBasedOnNOEPatterns(java.lang.String[] argv)
          Packing helices based on noe patterns.
static void SSEsOneToOnePacking(java.lang.String[] argv)
          packing two single SSEs using sparse NOE restraints.
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SSEPacking

public SSEPacking()
Instantiates a new sSE packing.


SSEPacking

public SSEPacking(double dbT,
                  double dbP,
                  double dbR,
                  double dbS)
Instantiates a new sSE packing.

Parameters:
dbT - the db t
dbP - the db p
dbR - the db r
dbS - the db s
Method Detail

getTheta

public double getTheta()
Gets the theta.

Returns:
the theta

getPhi

public double getPhi()
Gets the phi.

Returns:
the phi

getLengthR

public double getLengthR()
Gets the length r.

Returns:
the length r

getScore

public double getScore()
Gets the score.

Returns:
the score

SSEsOneToOnePacking

public static void SSEsOneToOnePacking(java.lang.String[] argv)
                                throws JampackException
packing two single SSEs using sparse NOE restraints.

Parameters:
argv - the argv
Throws:
JampackException - the jampack exception

PackingHelicesBasedOnNOEPatterns

public static void PackingHelicesBasedOnNOEPatterns(java.lang.String[] argv)
                                             throws JampackException
Packing helices based on noe patterns. This function is still under developing.

Parameters:
argv - the argv
Throws:
JampackException - the jampack exception

main1

public static void main1(java.lang.String[] argv)
                  throws JampackException
Main function for testing.

Parameters:
argv - the argv
Throws:
JampackException - the jampack exception