A B C D E F G H I J K L M N O P Q R S T U V X Z

G

gapThreshold - Variable in class RdcPanda.Goal
 
Gaussian - Class in RdcPanda
Compilation: javac Gaussian.java Execution: java Gaussian x mu sigma Function to compute the Gaussian pdf (probability density function) and the Gaussian cdf (cumulative density function) % java Gaussian 820 1019 209 0.17050966869132111 % java Gaussian 1500 1019 209 0.9893164837383883 % java Gaussian 1500 1025 231 0.9801220907365489 The approximation is accurate to absolute error less than 8 * 10^(-16).
Gaussian() - Constructor for class RdcPanda.Gaussian
 
genc(Zmat, int, int, int) - Static method in class Jampack.House
Generates a Householder transformation from within the part of column c of a Zmat (altered) extending from rows r1 to r2.
genc(double, double, double, double) - Static method in class Jampack.Rot
Given the real and imaginary parts of a 2-vector, genc returns a plane rotation P such that
genc(double, double, double, double, Rot) - Static method in class Jampack.Rot
Given the real and imaginary parts of a 2-vector, genc generates a plane rotation P such that
genc(double, double) - Static method in class Jampack.Rot
Given a real 2-vector, genc returns a real plane rotation P such that
genc(double, double, Rot) - Static method in class Jampack.Rot
Given a real 2-vectc, genc generates a real plane rotation P such that
genc(Zmat, int, int, int) - Static method in class Jampack.Rot
Given a Zmat A, genc returns a plane rotation that on premultiplication into rows ii1 and ii2 annihilates A(ii2,jj).
genc(Zmat, int, int, int, Rot) - Static method in class Jampack.Rot
Given a Zmat A, genc generates a plane rotation that on premultiplication into rows ii1 and ii2 annihilates A(ii2,jj).
GenerateStereoAsg(Vector) - Method in class RdcPanda.H1CS
generate all stereospecific assignments Note: there might exist two frequencies assigning to the same proton.
generator - Variable in class RdcPanda.Loops
 
genr(Zmat, int, int, int) - Static method in class Jampack.House
Generates a Householder transformation from within the part of row r of a Zmat (altered) extending from columns c1 to c2.
genr(double, double, double, double) - Static method in class Jampack.Rot
Given the real and imaginary parts of a 2-vector, genr returns a plane rotation such that
genr(double, double, double, double, Rot) - Static method in class Jampack.Rot
Given the real and imaginary parts of a 2-vector, genr generates a plane rotation such that
genr(Zmat, int, int, int) - Static method in class Jampack.Rot
Given a Zmat A, genr returns a plane rotation that on postmultiplication into column jj1 and jj2 annihilates A(ii,jj2).
genr(Zmat, int, int, int, Rot) - Static method in class Jampack.Rot
Given a Zmat A, genr generates a plane rotation that on postmultiplication into column jj1 and jj2 annihilates A(ii,jj2).
genr(double, double) - Static method in class Jampack.Rot
Given a real 2-vector, genr returns a plane rotation such that
genr(double, double, Rot) - Static method in class Jampack.Rot
Given a real 2-vector, genr generates a plane rotation such that
get(int) - Method in class Jampack.Z1
Returns the ith element of a Z1 as a Z.
get(int) - Method in class Jampack.Zdiagmat
Gets the ii-th diagonal element of a Zdiagmat.
get(int, int) - Method in class Jampack.Zmat
Returns the (ii,jj)-element of a Zmat.
get(int, int, int, int) - Method in class Jampack.Zmat
Returns the submatrix (ii1:ii2, jj1:jj2).
get(int[], int, int) - Method in class Jampack.Zmat
Returns the submatrix (ii[], jj1:jj2).
get(int, int, int[]) - Method in class Jampack.Zmat
Returns the submatrix (ii1:ii2, jj[]).
get(int[], int[]) - Method in class Jampack.Zmat
Returns the submatrix (ii[], jj[]).
get(int, int) - Method in class RdcPanda.Matrix
Get a single element.
get0(int) - Method in class Jampack.Zdiagmat
Gets the ith diagonal of a of a Zdiagmat (0-based).
get0(int, int) - Method in class Jampack.Zmat
Returns the zero-based (i,j)-element of a Zmat.
getAAName() - Method in class RdcPanda.Rotamer
Gets the aA name.
getAdjVec() - Method in class RdcPanda.Nasca.Node
 
getAll() - Method in class RdcPanda.sp3Carbon
Gets the all.
getAllRotVec() - Method in class RdcPanda.GraphCut
 
getArray() - Method in class RdcPanda.Matrix
Access the internal two-dimensional array.
getArrayCopy() - Method in class RdcPanda.Matrix
Copy the internal two-dimensional array.
getAssignMap() - Method in class RdcPanda.HcchTocsy
Gets the assign map.
getAssignMap() - Method in class RdcPanda.HnNoe
Gets the assign map.
getAssignProtonID() - Method in class RdcPanda.Nasca.Node
 
getAtom() - Method in class RdcPanda.Cartesian
Gets the atom name.
getAtomA() - Method in class RdcPanda.Hbond
Gets the atom a.
getAtomA() - Method in class RdcPanda.Noe
Gets the atom a.
getAtomB() - Method in class RdcPanda.Hbond
Gets the atom b.
getAtomB() - Method in class RdcPanda.Noe
Gets the atom b.
getAtomName() - Method in class RdcPanda.H1CS
Gets the atom name.
getAtomName() - Method in class RdcPanda.Nasca.Node
 
getAtomVec() - Method in class RdcPanda.Nasca.Node
 
getAtomVec() - Method in class RdcPanda.Pdb
Gets the atom vec.
getBackNoeVec() - Method in class RdcPanda.RotaPattern
Gets the back noe vec.
getBaseIndex() - Static method in class Jampack.Parameters
Returns the base index
getBinIndex() - Method in class RdcPanda.Noesy
Gets the bin index.
getC13() - Method in class RdcPanda.HcchTocsy
Gets the c13.
getC13() - Method in class RdcPanda.Hncacb
Gets the c13.
getCaNoeVector() - Method in class RdcPanda.BackNoe
Gets the ca noe vector.
getCHOL() - Method in class Jampack.Zmat
Returns a Cholesky decomposition if a valid one exists.
GetChRdcDif() - Method in class RdcPanda.Goal.TreePdb
 
getChRmsd() - Method in class RdcPanda.vdw
Gets the ch rmsd.
getColumnDimension() - Method in class RdcPanda.Matrix
Get column dimension.
getCoord() - Method in class RdcPanda.RotaPattern
Gets the coord.
getCoord() - Method in class RdcPanda.vdw
Gets the coord.
getCS() - Method in class RdcPanda.Peak
Gets the cS.
getCSAverage() - Method in class RdcPanda.H1CS
Gets the cS average.
getCSFromList(Vector, int, String) - Method in class RdcPanda.Peak
Gets the cS from list.
getCSH1() - Method in class RdcPanda.BackNoe
Gets the cS h1.
getCSH2() - Method in class RdcPanda.BackNoe
Gets the cS h2.
getCSHeavy() - Method in class RdcPanda.BackNoe
Gets the cS heavy.
getCSLower() - Method in class RdcPanda.H1CS
Gets the cS lower.
getCSSigma() - Method in class RdcPanda.H1CS
Gets the cS sigma.
getCSUpper() - Method in class RdcPanda.H1CS
Gets the cS upper.
getD() - Method in class RdcPanda.EigenvalueDecomposition
Return the block diagonal eigenvalue matrix
getDistance() - Method in class RdcPanda.BackNoe
Gets the distance.
getDistance() - Method in class RdcPanda.Hdist
Gets the distance.
GetEndDist() - Method in class RdcPanda.Goal.TreePdb
 
getEnsembleID() - Method in class RdcPanda.vdw
Gets the ensemble id.
getErr() - Method in class RdcPanda.Dipolar
Gets the err.
getFirstAtomName() - Method in class RdcPanda.Hdist
Gets the first atom name.
getFirstCart() - Method in class RdcPanda.Hdist
Gets the first cart.
getFirstResName() - Method in class RdcPanda.BackNoe
Gets the first res name.
getFirstResName() - Method in class RdcPanda.Hdist
Gets the first res name.
getFirstResNo() - Method in class RdcPanda.BackNoe
Gets the first res no.
getFirstResNo() - Method in class RdcPanda.Hdist
Gets the first res no.
getH1() - Method in class RdcPanda.HcchTocsy
Gets the h1.
getH1() - Method in class RdcPanda.Hncacb
Gets the h1.
getH1() - Method in class RdcPanda.HnNoe
Gets the h1.
getH1() - Method in class RdcPanda.Noesy
Gets the h1.
getH1CS() - Method in class RdcPanda.H1CS
Gets the h1 cs.
getH1Name() - Method in class RdcPanda.BackNoe
Gets the h1 name.
getH1NoeVec() - Method in class RdcPanda.Assign
Gets the h1 noe vec.
getH2() - Method in class RdcPanda.Noesy
Gets the h2.
getH2Name() - Method in class RdcPanda.BackNoe
Gets the h2 name.
getHA() - Method in class RdcPanda.HcchTocsy
Gets the hA.
getHaNoeVec() - Method in class RdcPanda.Assign
Gets the ha noe vec.
getHcchVec() - Method in class RdcPanda.Residue
Gets the hcch vec.
getHCS1() - Method in class RdcPanda.ScNoe
Gets the hC s1.
getHCS2() - Method in class RdcPanda.ScNoe
Gets the hC s2.
getHdistVec() - Method in class RdcPanda.RotaPattern
Gets the hdist vec.
getHeavy() - Method in class RdcPanda.Noesy
Gets the heavy.
getHeavy1() - Method in class RdcPanda.Noesy
Gets the heavy1.
getHeavy2() - Method in class RdcPanda.Noesy
Gets the heavy2.
GetHeavyAtomFromProton(String, String) - Method in class RdcPanda.Peak
Gets the heavy atom from proton.
getHeavyCS() - Method in class RdcPanda.Nasca.Node
 
getHeavyName() - Method in class RdcPanda.BackNoe
Gets the heavy name.
getHN() - Method in class RdcPanda.HnNoe
Gets the hN.
getHN() - Method in class RdcPanda.Hsqc
Gets the hN.
getHnNoeVec() - Method in class RdcPanda.Assign
Gets the hn noe vec.
getHnNoeVector() - Method in class RdcPanda.BackNoe
Gets the hn noe vector.
getHomoScore(int) - Method in class RdcPanda.GraphCut
 
getHQR() - Method in class Jampack.Zmat
Returns a Householder QR decomposition if a valid one exists.
GetID() - Method in class RdcPanda.Goal.TreePdb
 
getID() - Method in class RdcPanda.Hbond
Gets the iD.
getID() - Method in class RdcPanda.Nasca.Node
 
getID() - Method in class RdcPanda.vdw
Gets the iD.
getIm() - Method in class Jampack.Zmat
Returns a copy of the imaginary part of a Zmat.
getImagEigenvalues() - Method in class RdcPanda.EigenvalueDecomposition
Return the imaginary parts of the eigenvalues
getInt() - Method in class RdcPanda.Hsqc
Gets the int.
getIntensity() - Method in class RdcPanda.BackNoe
Gets the intensity.
getIntensity() - Method in class RdcPanda.HcchTocsy
Gets the intensity.
getIntensity() - Method in class RdcPanda.Hncacb
Gets the intensity.
getIntensity() - Method in class RdcPanda.HnNoe
Gets the intensity.
getIntensity() - Method in class RdcPanda.Noesy
Gets the intensity.
getIntensity() - Method in class RdcPanda.ScNoe
Gets the intensity.
getIsAssg() - Method in class RdcPanda.Peak
Gets the checks if is assg.
getIsAssigned() - Method in class RdcPanda.Nasca.Node
 
getIsMissing() - Method in class RdcPanda.BackNoe
Gets the checks if is missing.
getIsRemainedLabel(int) - Method in class RdcPanda.GraphCut
 
getIsRestrained() - Method in class RdcPanda.Nasca.Node
 
getLabel() - Method in class RdcPanda.HnNoe
Gets the label.
getLengthR() - Method in class RdcPanda.SSEPacking
Gets the length r.
getLower() - Method in class RdcPanda.Noe
Gets the lower.
getLU() - Method in class Jampack.Zmat
Returns an LU decomposition if a valid one exists.
getMap() - Method in class RdcPanda.Assign
Gets the map.
getMappingSet() - Method in class RdcPanda.Nasca.Node
 
getMaxValue() - Method in class RdcPanda.Assign
Gets the max value.
getMissingIndex() - Method in class RdcPanda.Assign
Gets the missing index.
getMissingPenalty() - Method in class RdcPanda.BackNoe
Gets the missing penalty.
getMissingProb() - Method in class RdcPanda.BackNoe
Gets the missing prob.
getModelID() - Method in class RdcPanda.vdw
Gets the model id.
getN15() - Method in class RdcPanda.Hncacb
Gets the n15.
getN15() - Method in class RdcPanda.HnNoe
Gets the n15.
getN15() - Method in class RdcPanda.Hsqc
Gets the n15.
getNeighborVec() - Method in class RdcPanda.GraphCut
 
GetNhRdcDif() - Method in class RdcPanda.Goal.TreePdb
 
getNhRmsd() - Method in class RdcPanda.vdw
Gets the nh rmsd.
getNoeMap() - Method in class RdcPanda.Residue
Gets the noe map.
getNoeRmsd() - Method in class RdcPanda.vdw
Gets the noe rmsd.
getNucleus() - Method in class RdcPanda.Peak
Gets the nucleus.
getOrder(String) - Method in class RdcPanda.Assign
A very simple reader for secondary structure identification file.
getOrder(String) - Method in class RdcPanda.IDof2aryStructure
A very simple reader for secondary structure identification file.
getOriginID() - Method in class RdcPanda.GraphCut.RotScore
 
getPairScore(int, int, int) - Method in class RdcPanda.GraphCut
 
getPdb() - Method in class RdcPanda.PdbRdc
Gets the pdb.
getPdb() - Method in class RdcPanda.RotaPattern
Gets the pdb.
getPDB() - Method in class RdcPanda.vdw
Gets the pDB.
getPdbVec() - Method in class RdcPanda.Rotamer
Gets the pdb vec.
getPdbVecA() - Method in class RdcPanda.PdbRmsd
Gets the pdb vec a.
getPdbVecB() - Method in class RdcPanda.PdbRmsd
Gets the pdb vec b.
getPeakID() - Method in class RdcPanda.Noe
Gets the peak id.
getPeakNo() - Method in class RdcPanda.Hncacb
Gets the peak no.
getPeakNo() - Method in class RdcPanda.Hsqc
Gets the peak no.
getPeakVec() - Method in class RdcPanda.Residue
Gets the peak vec.
getPhi() - Method in class RdcPanda.ModelRdc
Gets the phi.
getPhi() - Method in class RdcPanda.PhiPsi
Gets the phi.
getPhi() - Method in class RdcPanda.SSEPacking
Gets the phi.
getPhiLower() - Method in class RdcPanda.PhiPsi
Gets the phi lower.
getPhiUpper() - Method in class RdcPanda.PhiPsi
Gets the phi upper.
getProperties() - Method in class Jampack.Zdiagmat
Sets the public parameters.
getProperties() - Method in class Jampack.Zmat
Sets the public parameters.
getProtonCS() - Method in class RdcPanda.Nasca.Node
 
getPsi() - Method in class RdcPanda.ModelRdc
Gets the psi.
getPsi() - Method in class RdcPanda.PhiPsi
Gets the psi.
getPsiLower() - Method in class RdcPanda.PhiPsi
Gets the psi lower.
getPsiUpper() - Method in class RdcPanda.PhiPsi
Gets the psi upper.
GetRamaScore() - Method in class RdcPanda.Goal.TreePdb
 
getRamaScore() - Method in class RdcPanda.PhiPsi
Gets the rama score.
getRange() - Method in class RdcPanda.Noe
Gets the range.
getRatioEnsemb() - Method in class RdcPanda.Noe
Gets the ratio ensemb.
getRdc() - Method in class RdcPanda.Dipolar
Gets the rdc.
getRdc() - Method in class RdcPanda.PdbRdc
Gets the rdc.
getRe() - Method in class Jampack.Zmat
Returns a copy of the real part of a Zmat.
getRealEigenvalues() - Method in class RdcPanda.EigenvalueDecomposition
Return the real parts of the eigenvalues
getResidue() - Method in class RdcPanda.Dipolar
Gets the residue.
getResidue() - Method in class RdcPanda.ModelRdc
Gets the residue.
getResidue() - Method in class RdcPanda.Pdb
Gets the residue.
getResidue() - Method in class RdcPanda.PhiPsi
Gets the residue.
getResidueA() - Method in class RdcPanda.Noe
Gets the residue a.
getResidueB() - Method in class RdcPanda.Noe
Gets the residue b.
getResidueName() - Method in class RdcPanda.GraphCut
 
getResidueNo() - Method in class RdcPanda.Assign
Gets the residue no.
getResidueNo() - Method in class RdcPanda.Dipolar
Gets the residue no.
getResidueNo() - Method in class RdcPanda.GraphCut
 
getResidueNo() - Method in class RdcPanda.H1CS
Gets the residue no.
getResidueNo() - Method in class RdcPanda.HcchTocsy
Gets the residue no.
getResidueNo() - Method in class RdcPanda.Hncacb
Gets the residue no.
getResidueNo() - Method in class RdcPanda.HnNoe
Gets the residue no.
getResidueNo() - Method in class RdcPanda.Hsqc
Gets the residue no.
getResidueNo() - Method in class RdcPanda.ModelRdc
Gets the residue no.
getResidueNo() - Method in class RdcPanda.Noesy
Gets the residue no.
getResidueNo() - Method in class RdcPanda.Pdb
Gets the residue no.
getResidueNo() - Method in class RdcPanda.PhiPsi
Gets the residue no.
getResidueNo() - Method in class RdcPanda.Residue
Gets the residue no.
getResidueNoA() - Method in class RdcPanda.Hbond
Gets the residue no a.
getResidueNoA() - Method in class RdcPanda.IDof2aryStructure
Gets the residue no a.
getResidueNoA() - Method in class RdcPanda.Noe
Gets the residue no a.
getResidueNoB() - Method in class RdcPanda.Hbond
Gets the residue no b.
getResidueNoB() - Method in class RdcPanda.IDof2aryStructure
Gets the residue no b.
getResidueNoB() - Method in class RdcPanda.Noe
Gets the residue no b.
getResidueType() - Method in class RdcPanda.Assign
Gets the residue type.
getResidueType() - Method in class RdcPanda.H1CS
Gets the residue type.
getResidueType() - Method in class RdcPanda.HcchTocsy
Gets the residue type.
getResidueType() - Method in class RdcPanda.HnNoe
Gets the residue type.
getResidueType() - Method in class RdcPanda.Hsqc
Gets the residue type.
getResidueType() - Method in class RdcPanda.Noesy
Gets the residue type.
getResidueType() - Method in class RdcPanda.Residue
Gets the residue type.
getResName() - Method in class RdcPanda.Nasca.Node
 
GetResNameFromSequence(Vector, int) - Method in class RdcPanda.Loops
get the residue name from the sequence information, given the residue number.
getResNameFromSequence(Vector, int) - Method in class RdcPanda.Noe
get the residue name from the sequence vector.
getResNo() - Method in class RdcPanda.Nasca.Node
 
getResNo() - Method in class RdcPanda.RotaPattern
Gets the res no.
getResType() - Method in class RdcPanda.RotaPattern
Gets the res type.
getRmsd() - Method in class RdcPanda.BackNoe
Gets the rmsd.
getRmsdH1() - Method in class RdcPanda.BackNoe
Gets the rmsd h1.
getRmsdH2() - Method in class RdcPanda.BackNoe
Gets the rmsd h2.
getRmsdHeavy() - Method in class RdcPanda.BackNoe
Gets the rmsd heavy.
getRotamerRatio() - Method in class RdcPanda.Pdb
Gets the rotamer ratio.
getRotLabel() - Method in class RdcPanda.GraphCut
 
getRotPdb() - Method in class RdcPanda.GraphCut.RotScore
 
getRotScore() - Method in class RdcPanda.GraphCut.RotScore
 
getRotScoreVec() - Method in class RdcPanda.GraphCut
 
getRowDimension() - Method in class RdcPanda.Matrix
Get row dimension.
getS() - Method in class RdcPanda.SingularValueDecomposition
Return the diagonal matrix of singular values.
getScore() - Method in class RdcPanda.RotaPattern
Gets the score.
getScore() - Method in class RdcPanda.SSEPacking
Gets the score.
getSecondAtomName() - Method in class RdcPanda.Hdist
Gets the second atom name.
getSecondCart() - Method in class RdcPanda.Hdist
Gets the second cart.
getSecondResName() - Method in class RdcPanda.BackNoe
Gets the second res name.
getSecondResName() - Method in class RdcPanda.Hdist
Gets the second res name.
getSecondResNo() - Method in class RdcPanda.BackNoe
Gets the second res no.
getSecondResNo() - Method in class RdcPanda.Hdist
Gets the second res no.
getSingularValues() - Method in class RdcPanda.SingularValueDecomposition
Return the one-dimensional array of singular values.
getStringID() - Method in class RdcPanda.vdw
Gets the string id.
GetSumRdcDif() - Method in class RdcPanda.Goal.TreePdb
 
getTheta() - Method in class RdcPanda.SSEPacking
Gets the theta.
getTopScoreRots(int) - Method in class RdcPanda.GraphCut
 
getType() - Method in class RdcPanda.Hbond
Gets the type.
getTypeAndID() - Method in class RdcPanda.IDof2aryStructure
Gets the type and id.
getU() - Method in class RdcPanda.SingularValueDecomposition
Return the left singular vectors.
getUncertainty() - Method in class RdcPanda.Noesy
Gets the uncertainty.
getUpper() - Method in class RdcPanda.Noe
Gets the upper.
getUpperDist() - Method in class RdcPanda.Noesy
Gets the upper dist.
getV() - Method in class RdcPanda.EigenvalueDecomposition
Return the eigenvector matrix
getV() - Method in class RdcPanda.SingularValueDecomposition
Return the right singular vectors.
getVdwScore() - Method in class RdcPanda.vdw
Gets the vdw score.
getVecH_A() - Method in class RdcPanda.Noe
Gets the vec h_ a.
getVecH_B() - Method in class RdcPanda.Noe
Gets the vec h_ b.
getX() - Method in class RdcPanda.Cartesian
Gets the x.
getXYZ() - Method in class RdcPanda.Cartesian
Gets the xYZ.
getY() - Method in class RdcPanda.Cartesian
Gets the y.
getZ() - Method in class Jampack.Zmat
Returns a copy of the real and imaginary parts as a complex array.
getZ() - Method in class RdcPanda.Cartesian
Gets the z.
Goal - Class in RdcPanda
 
Goal() - Constructor for class RdcPanda.Goal
 
Goal.TreePdb - Class in RdcPanda
 
Goal.TreePdb(Goal.TreePdb) - Constructor for class RdcPanda.Goal.TreePdb
 
Goal.TreePdb() - Constructor for class RdcPanda.Goal.TreePdb
 
Goal.TreePdb(int, String, Vector) - Constructor for class RdcPanda.Goal.TreePdb
 
Goal.TreePdb(Pdb) - Constructor for class RdcPanda.Goal.TreePdb
 
Goal.TreePdb(int, String, Vector, Vector, Goal.TreePdb) - Constructor for class RdcPanda.Goal.TreePdb
 
Goal.TreePdb(Pdb, Vector, Goal.TreePdb) - Constructor for class RdcPanda.Goal.TreePdb
 
Goal.TreePdbAllComparator - Class in RdcPanda
 
Goal.TreePdbAllComparator() - Constructor for class RdcPanda.Goal.TreePdbAllComparator
 
Goal.TreePdbIDComparator - Class in RdcPanda
 
Goal.TreePdbIDComparator() - Constructor for class RdcPanda.Goal.TreePdbIDComparator
 
Goal.TreePdbNOEComparator - Class in RdcPanda
 
Goal.TreePdbNOEComparator() - Constructor for class RdcPanda.Goal.TreePdbNOEComparator
 
Goal.TreePdbRamaComparator - Class in RdcPanda
 
Goal.TreePdbRamaComparator() - Constructor for class RdcPanda.Goal.TreePdbRamaComparator
 
Goal.TreePdbRDCComparator - Class in RdcPanda
 
Goal.TreePdbRDCComparator() - Constructor for class RdcPanda.Goal.TreePdbRDCComparator
 
Goal.TreePdbSumRDCComparator - Class in RdcPanda
 
Goal.TreePdbSumRDCComparator() - Constructor for class RdcPanda.Goal.TreePdbSumRDCComparator
 
GraphConstruction(Vector, String, double) - Method in class RdcPanda.GraphCut
Construct the residue interation graph
GraphCut - Class in RdcPanda
 
GraphCut() - Constructor for class RdcPanda.GraphCut
 
GraphCut(int) - Constructor for class RdcPanda.GraphCut
 
GraphCut(String, int, int, Vector) - Constructor for class RdcPanda.GraphCut
 
GraphCut(String, int, int, Vector, Vector) - Constructor for class RdcPanda.GraphCut
 
GraphCut.ResNoComparator - Class in RdcPanda
 
GraphCut.ResNoComparator() - Constructor for class RdcPanda.GraphCut.ResNoComparator
 
GraphCut.RotScore - Class in RdcPanda
 
GraphCut.RotScore() - Constructor for class RdcPanda.GraphCut.RotScore
 
GraphCut.RotScore(int, Pdb, double) - Constructor for class RdcPanda.GraphCut.RotScore
 
GraphCut.RotScore(Pdb, double) - Constructor for class RdcPanda.GraphCut.RotScore
 
GraphCut.RotScoreComparator - Class in RdcPanda
 
GraphCut.RotScoreComparator() - Constructor for class RdcPanda.GraphCut.RotScoreComparator
 
GreedyGraphMatching(Vector, Vector, int[][], double[][], Vector, Vector) - Method in class RdcPanda.Nasca
at each step, choose the most confident assignment for one proton node.
GreedyGraphMatchingAstar(Vector, Vector, int[][], double[][], Vector, Vector, Vector, Vector, String, double) - Method in class RdcPanda.Nasca
Not used now at each step, choose the most confident assignment for one proton node.
GreedyGraphMatchingResidue(Vector, Vector, int[][], double[][], Vector, Vector) - Method in class RdcPanda.Nasca
at each step, choose the most confident assignment for one proton node.

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