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Packages that use RdcPanda | |
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RdcPanda |
Classes in RdcPanda used by RdcPanda | |
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Assign
This class provides functions that involves NOE assignment, such initial NOE assignment using only chemical shift information, pruning ambiguous NOE assignments using given structural information,etc. |
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BackNoe
This class provides functions that involves back-computed NOEs. |
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Cartesian
This class defines Cartesian coordinates for individual atom in protein structure. |
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Dipolar
This class provides data structures processing experimental RDC data. |
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Goal.TreePdb
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H1CS
This class provides data structures that involve chemical shifts. |
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HcchTocsy
This class defines data structures related to HcchTocsy. |
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Hdist
This class provides data structures related to back-computed NOE distance restraints. |
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HnNoe
This class defines data structures related to N-15 labeled NOEs. |
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IDof2aryStructure
This class provides functions for processing files with secondary structure element information. |
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Matrix
This class is modified from the Jama numeric package. |
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Nasca.Node
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Noe
This class provides data structures and functions for processing NOE assignment. |
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Noesy
This class provides data structures and functions for processing NOESY spectra. |
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Pdb
This class provides data structures and functions for processing and generating PDB files and extracting backbone angles etc. |
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PhiPsi
Various methods for exact solution and systematic search including the computation of rotation to the frist peptide plane the DFS-search and solver of the quartic equation and the computation of \phi and \psi angles from two vectors in consecutive planse etc. |
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RotaPattern
This class implements data structures and functions that deal with the rotamer properties. |
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SingularValueDecomposition
This class provides functions for SVD operations (from Jama package). |
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sp3Carbon
represeting the tetrahedral of the sp3 Carbon configuration IN order to compute the coordinates we need only to know the coordinates of the top atom then using the information provided by the sp3Carbon object we should be able to compute all the coordinates of other atoms. |
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