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T
- Variable in class Jampack.
Schur
The upper triangular matrix.
talosAngleReader(String)
- Method in class RdcPanda.
PhiPsi
A very simple reader for talos angle.
testDirCaCa()
- Method in class RdcPanda.
PhiPsi
Test dir ca ca.
testNOEs()
- Method in class RdcPanda.
PhiPsi
Testing the methods for computing the \phi and \psi angle from NOE disances.
testPhiPsiByCa(Vector)
- Method in class RdcPanda.
PhiPsi
Test phi psi by ca.
tetrahedral(double[], Matrix, sp3Carbon)
- Method in class RdcPanda.
sp3Carbon
Compute the coordinates of sp3 atoms from a sp3Carbon object.
Times
- Class in
Jampack
Times()
- Constructor for class Jampack.
Times
Times(Z, Z)
- Method in class Jampack.
Z
Computes the product of two Z's.
Times(double, Z)
- Method in class Jampack.
Z
Computes the product of a double and a Z.
Times(int, Z)
- Method in class Jampack.
Z1
Multiplies the ith element of a Z1 by a Z.
times(double)
- Method in class RdcPanda.
Matrix
Multiply a matrix by a scalar, C = s*A.
times(Matrix)
- Method in class RdcPanda.
Matrix
Linear algebraic matrix multiplication, A * B.
times(double[])
- Method in class RdcPanda.
Matrix
Times.
toString()
- Method in class RdcPanda.
Assign
toString()
- Method in class RdcPanda.
Cartesian
toString()
- Method in class RdcPanda.
Dipolar
toString()
- Method in class RdcPanda.
Hbond
toString()
- Method in class RdcPanda.
HcchTocsy
toString()
- Method in class RdcPanda.
Hncacb
toString()
- Method in class RdcPanda.
HnNoe
toString()
- Method in class RdcPanda.
Hsqc
toString()
- Method in class RdcPanda.
IDof2aryStructure
toString()
- Method in class RdcPanda.
ModelRdc
toString()
- Method in class RdcPanda.
Noe
toString()
- Method in class RdcPanda.
Pdb
toString()
- Method in class RdcPanda.
Peak
toString()
- Method in class RdcPanda.
PhiPsi
toString()
- Method in class RdcPanda.
Residue
toString()
- Method in class RdcPanda.
sp3Carbon
trace()
- Method in class RdcPanda.
Matrix
Trace.
TranRotGridSearch(double[], double[], double[], double[], Vector<Pdb>, double, double, boolean, double[], double[])
- Method in class RdcPanda.
Goal
search T(3)*S(3) space to find the optimal solution that best fits the NOESY data
TranRotGridSearchNew(double[], double[], double[], double[], double[], int, int, int, Vector<RotaPattern>)
- Method in class RdcPanda.
Goal
search T(3)*S(3) space to find the optimal solution that best fits the NOESY data Use euler angle rather than grid points.
trans(Zmat)
- Static method in class Jampack.
H
Returns the transpose of a Zmat.
transpose()
- Method in class RdcPanda.
Matrix
Matrix transpose.
turnByCaCa(Vector, Vector, Vector, Vector, Vector, Vector, double, double, int, int, double, double)
- Method in class RdcPanda.
PhiPsi
Compute the turns (8 - 11) by randomly changing the.
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