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L
L
- Variable in class Jampack.
Zludpp
The lower triangular matrix L
length(double[])
- Method in class RdcPanda.
ModelRdc
compute the length of a vector v1.
length(double[])
- Method in class RdcPanda.
Pdb
Length.
length(double[])
- Method in class RdcPanda.
Peak
Length.
length(double[])
- Method in class RdcPanda.
PhiPsi
calculate the length between two vectors v1 and v2 The returned angle is the [0,Pi] region.
length(double[])
- Method in class RdcPanda.
ppGlobal
calculate the length between two vectors v1 and v2 The returned angle is the [0,Pi] region.
length(double[])
- Method in class RdcPanda.
vdw
Length.
LongRangeNoeReader(String, double, String)
- Method in class RdcPanda.
Noe
long reange noe read from cyana format.
LongRangeNoeReader2(String)
- Method in class RdcPanda.
Noe
long reange noe read from cyana format.
LongRangeNoeReaderTestLW(String)
- Method in class RdcPanda.
Noe
This is an old function.
longTurn(Vector, Vector, Vector, Vector, Vector, Vector, double, double, int, int, double, double)
- Method in class RdcPanda.
PhiPsi
Compute the loop (18 - 23) by randomly changing the 18, 19 backbone dihedral angles.
loop34To41(double[][], double, double, int, int, double[], double[], double[], double[], double[], double[], Vector, double[])
- Method in class RdcPanda.
PhiPsi
Loop34 to41.
loop50To56(Vector, Vector, Vector, Vector, Vector, Vector, double, double, int, int, double, double)
- Method in class RdcPanda.
PhiPsi
Compute the loop L50-L56 given the orientation of the peptide planes L50 and L56.
loop59To65(double[][], double, double, int, int, double[], double[], double[], double[], double[], double[], Vector, double[])
- Method in class RdcPanda.
PhiPsi
Compute the loop Y59 <--> K63 given the absolute coordinates for Y59 and E64.
LoopAllComputation(int, int)
- Method in class RdcPanda.
Goal
compute the loop structures
LoopAllComputationBackward(int, int)
- Method in class RdcPanda.
Goal
compute the loop structures from backward direction
LoopAllComputationBiDirection(int, int)
- Method in class RdcPanda.
Goal
compute the loop structures from both direction
LoopComputFromNOEPatterns(double, double, double, Vector, Vector, Vector, String, Vector, double, int, int)
- Method in class RdcPanda.
Pdb
Compute a structure, given the backbone and rotamers at all residue positions.
LoopCurResPhiPsiExactSearch(Vector, int, int, int, double, double, Vector, Vector, boolean)
- Method in class RdcPanda.
Goal
compute possible phi/psi angles for current residue using RDC-EXACT algorithm.
LoopCurResPhiPsiExactSearchBackward(Vector, int, int, int, double, double, Vector, Vector, boolean)
- Method in class RdcPanda.
Goal
compute possible phi/psi angles for current residue using RDC-EXACT algorithm.
LoopCurResPhiPsiGridSearch(Vector, int, int, int, double, double, Vector, Vector, boolean)
- Method in class RdcPanda.
Goal
compute possible phi/psi angles for current residue when the RDCs are missing.
LoopCurResPhiPsiGridSearchBackward(Vector, int, int, int, double, double, Vector, Vector, boolean)
- Method in class RdcPanda.
Goal
compute possible phi/psi angles for current residue when the RDCs are missing.
LoopFirstHalfResPsiGridSearch(int, int, double, Vector, Vector)
- Method in class RdcPanda.
Goal
compute possible psi angles for the first half residue.
LoopLastHalfResPsiGridSearch(int, int, double, double, Vector, Vector)
- Method in class RdcPanda.
Goal
compute possible psi angles for the last half residue, which will be used to compute the second half fragment in a backward way.
LoopLocalGapClosure(Vector, int, int)
- Method in class RdcPanda.
Goal
use the gradient search to close the gap, while statisfying the NOE restraints
LoopLocalGapClosureBackward(Vector, int, int)
- Method in class RdcPanda.
Goal
use the gradient search to close the gap, for backward computation
Loops
- Class in
RdcPanda
Loops()
- Constructor for class RdcPanda.
Loops
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