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H

H - Class in Jampack
H computes the conjugate transpose of a matrix and the transpose of a complex matrix.
H() - Constructor for class Jampack.H
 
H - Variable in class Jampack.Zhess
The upper Hessenberg matrix
H1CS - Class in RdcPanda
This class provides data structures that involve chemical shifts.
H1CS() - Constructor for class RdcPanda.H1CS
Instantiates a new h1 cs.
H1CS(int) - Constructor for class RdcPanda.H1CS
Instantiates a new h1 cs.
H1CS(int, String, String) - Constructor for class RdcPanda.H1CS
Instantiates a new h1 cs.
H1CS(int, String, String, double, int, int) - Constructor for class RdcPanda.H1CS
Instantiates a new h1 cs.
H1CS(int, String, String, double) - Constructor for class RdcPanda.H1CS
Instantiates a new h1 cs.
H1CS(int, String, String, double, double) - Constructor for class RdcPanda.H1CS
Instantiates a new h1 cs.
H1CS(int, String, String, double, double, double, double) - Constructor for class RdcPanda.H1CS
Instantiates a new h1 cs.
H1CS.csComparator - Class in RdcPanda
The Class csComparator.
H1CS.csComparator() - Constructor for class RdcPanda.H1CS.csComparator
 
H1CS.resNoComparator - Class in RdcPanda
The Class resNoComparator.
H1CS.resNoComparator() - Constructor for class RdcPanda.H1CS.resNoComparator
 
h1CSReader(String, Vector) - Method in class RdcPanda.H1CS
Read resonance list The required file format is:.
h1CSReader_BMRB(String) - Method in class RdcPanda.H1CS
Another method for reading chemical shifts, in BMRB format.
h1Distance(String, String, String) - Method in class RdcPanda.Pdb
A method to compute all the angles from ultrahigh resolution PDBs.
haCoCoords(double, double[], double[], double[]) - Method in class RdcPanda.ModelRdc
A method for computing coordinates of backbone atoms.
haCoCoords(double, double[], double[], double[], boolean) - Method in class RdcPanda.ModelRdc
A method for computing coordinates of backbone atoms.
hbOfTwoStrands(Vector, String) - Method in class RdcPanda.Hbond
Hb of two strands.
Hbond - Class in RdcPanda
This class defines data structures related to h-bonds.
Hbond() - Constructor for class RdcPanda.Hbond
Constructors.
Hbond(int, String, int, String, String, String) - Constructor for class RdcPanda.Hbond
Instantiates a new hbond.
Hbond.HbondComparatorA - Class in RdcPanda
The Class HbondComparatorA.
Hbond.HbondComparatorA() - Constructor for class RdcPanda.Hbond.HbondComparatorA
 
Hbond.HbondComparatorB - Class in RdcPanda
The Class HbondComparatorB.
Hbond.HbondComparatorB() - Constructor for class RdcPanda.Hbond.HbondComparatorB
 
HbondReader(String) - Method in class RdcPanda.Hbond
A very simple reader for H-bond data: see the attched file for the format.
hcchReader(String) - Method in class RdcPanda.HcchTocsy
read peak list generated by ANSIG.
hcchReader2(String) - Method in class RdcPanda.HcchTocsy
Read peak list generated by NMRView.
hcchReader3(String) - Method in class RdcPanda.HcchTocsy
Read peak list generated by NMRView.
hcchReader4(String) - Method in class RdcPanda.HcchTocsy
Read the cnoe pk list generated manually.
HcchTocsy - Class in RdcPanda
This class defines data structures related to HcchTocsy.
HcchTocsy() - Constructor for class RdcPanda.HcchTocsy
Instantiates a new hcch tocsy.
HcchTocsy(int) - Constructor for class RdcPanda.HcchTocsy
Instantiates a new hcch tocsy.
HcchTocsy(int, String, double, double, double, double) - Constructor for class RdcPanda.HcchTocsy
Instantiates a new hcch tocsy.
HcchTocsy(int, String, double, double, double, double, double) - Constructor for class RdcPanda.HcchTocsy
Instantiates a new hcch tocsy.
HcchTocsy.c13Comparator - Class in RdcPanda
The Class c13Comparator.
HcchTocsy.c13Comparator() - Constructor for class RdcPanda.HcchTocsy.c13Comparator
 
HcchTocsy.h1Comparator - Class in RdcPanda
The Class h1Comparator.
HcchTocsy.h1Comparator() - Constructor for class RdcPanda.HcchTocsy.h1Comparator
 
HcchTocsy.haComparator - Class in RdcPanda
The Class haComparator.
HcchTocsy.haComparator() - Constructor for class RdcPanda.HcchTocsy.haComparator
 
HcchTocsy.resNoComparator - Class in RdcPanda
The Class resNoComparator.
HcchTocsy.resNoComparator() - Constructor for class RdcPanda.HcchTocsy.resNoComparator
 
Hdist - Class in RdcPanda
This class provides data structures related to back-computed NOE distance restraints.
Hdist() - Constructor for class RdcPanda.Hdist
Instantiates a new hdist.
Hdist(Cartesian) - Constructor for class RdcPanda.Hdist
Instantiates a new hdist.
Hdist(Cartesian, int) - Constructor for class RdcPanda.Hdist
Instantiates a new hdist.
Hdist(Cartesian, int, Cartesian, int) - Constructor for class RdcPanda.Hdist
Instantiates a new hdist.
Hdist(Cartesian, int, String, Cartesian, int, String, double) - Constructor for class RdcPanda.Hdist
Instantiates a new hdist.
Hdist(Cartesian, int, String, String, Cartesian, int, String, String, double) - Constructor for class RdcPanda.Hdist
Instantiates a new hdist.
Hdist(Cartesian, int, Cartesian, int, double) - Constructor for class RdcPanda.Hdist
Instantiates a new hdist.
Hdist(Cartesian, Cartesian, double) - Constructor for class RdcPanda.Hdist
Instantiates a new hdist.
Hncacb - Class in RdcPanda
This class defines data structures related to Hncacb.
Hncacb() - Constructor for class RdcPanda.Hncacb
Instantiates a new hncacb.
Hncacb(int) - Constructor for class RdcPanda.Hncacb
Instantiates a new hncacb.
Hncacb(int, int, String, double, double, double, double) - Constructor for class RdcPanda.Hncacb
Instantiates a new hncacb.
Hncacb.c13Comparator - Class in RdcPanda
The Class c13Comparator.
Hncacb.c13Comparator() - Constructor for class RdcPanda.Hncacb.c13Comparator
 
Hncacb.hnComparator - Class in RdcPanda
The Class hnComparator.
Hncacb.hnComparator() - Constructor for class RdcPanda.Hncacb.hnComparator
 
Hncacb.n15Comparator - Class in RdcPanda
The Class n15Comparator.
Hncacb.n15Comparator() - Constructor for class RdcPanda.Hncacb.n15Comparator
 
Hncacb.peakNoComparator - Class in RdcPanda
The Class peakNoComparator.
Hncacb.peakNoComparator() - Constructor for class RdcPanda.Hncacb.peakNoComparator
 
Hncacb.resNoComparator - Class in RdcPanda
The Class resNoComparator.
Hncacb.resNoComparator() - Constructor for class RdcPanda.Hncacb.resNoComparator
 
hncacbRead(String) - Method in class RdcPanda.Hncacb
A method for reading files with RDC restraints.
HnNoe - Class in RdcPanda
This class defines data structures related to N-15 labeled NOEs.
HnNoe() - Constructor for class RdcPanda.HnNoe
Instantiates a new hn noe.
HnNoe(int) - Constructor for class RdcPanda.HnNoe
Instantiates a new hn noe.
HnNoe(int, String, double, double, double, double) - Constructor for class RdcPanda.HnNoe
Instantiates a new hn noe.
HnNoe(int, String, double, double, double, double, double) - Constructor for class RdcPanda.HnNoe
Instantiates a new hn noe.
HnNoe(int, String, double, double, double, int) - Constructor for class RdcPanda.HnNoe
Instantiates a new hn noe.
HnNoe(int, String, double, double, double, double, Map) - Constructor for class RdcPanda.HnNoe
Instantiates a new hn noe.
HnNoe(double, double, double) - Constructor for class RdcPanda.HnNoe
Instantiates a new hn noe.
HnNoe.h1Comparator - Class in RdcPanda
The Class h1Comparator.
HnNoe.h1Comparator() - Constructor for class RdcPanda.HnNoe.h1Comparator
 
HnNoe.hnComparator - Class in RdcPanda
The Class hnComparator.
HnNoe.hnComparator() - Constructor for class RdcPanda.HnNoe.hnComparator
 
HnNoe.n15Comparator - Class in RdcPanda
The Class n15Comparator.
HnNoe.n15Comparator() - Constructor for class RdcPanda.HnNoe.n15Comparator
 
HnNoe.resNoComparator - Class in RdcPanda
The Class resNoComparator.
HnNoe.resNoComparator() - Constructor for class RdcPanda.HnNoe.resNoComparator
 
hnNoeReader(String) - Method in class RdcPanda.HnNoe
A method for reading NOE files The required file format is:.
hnNoeReader2(String) - Method in class RdcPanda.HnNoe
Another method for reading NOE files The required file format is:.
House - Class in Jampack
House provides static methods to generate and apply Householder transformations.
House() - Constructor for class Jampack.House
 
Hsqc - Class in RdcPanda
This class defines data structures related to HSQC peaks.
Hsqc() - Constructor for class RdcPanda.Hsqc
Instantiates a new hsqc.
Hsqc(int) - Constructor for class RdcPanda.Hsqc
Instantiates a new hsqc.
Hsqc(int, int, String, double, double, double) - Constructor for class RdcPanda.Hsqc
Instantiates a new hsqc.
Hsqc.hnComparator - Class in RdcPanda
The Class hnComparator.
Hsqc.hnComparator() - Constructor for class RdcPanda.Hsqc.hnComparator
 
Hsqc.n15Comparator - Class in RdcPanda
The Class n15Comparator.
Hsqc.n15Comparator() - Constructor for class RdcPanda.Hsqc.n15Comparator
 
Hsqc.peakNoComparator - Class in RdcPanda
The Class peakNoComparator.
Hsqc.peakNoComparator() - Constructor for class RdcPanda.Hsqc.peakNoComparator
 
Hsqc.resNoComparator - Class in RdcPanda
The Class resNoComparator.
Hsqc.resNoComparator() - Constructor for class RdcPanda.Hsqc.resNoComparator
 
hsqcRead(String) - Method in class RdcPanda.Hsqc
A method for reading files with RDC restraints.
hsqcReader2(String) - Method in class RdcPanda.Hsqc
A method for reading files with RDC restraints.
hsqcReader3(String) - Method in class RdcPanda.Hsqc
Hsqc reader3.
hypot(double, double) - Static method in class RdcPanda.Maths
sqrt(a^2 + b^2) without under/overflow.

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