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java.lang.ObjectRdcPanda.Residue
public class Residue
A very simple Residue class with the Notation like Val1, Ala25. Written by Lincong Wang (2001-2005).
Nested Class Summary | |
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static class |
Residue.caComparator
The Class caComparator. |
static class |
Residue.cbComparator
The Class cbComparator. |
Constructor Summary | |
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Residue()
Instantiates a new residue. |
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Residue(int no)
A constructor designed specifically for the Comparator class used for the Sort and BinarySearch. |
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Residue(int no,
java.lang.String type)
Instantiates a new residue. |
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Residue(int no,
java.lang.String type,
java.util.Vector hcVec)
Instantiates a new residue. |
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Residue(int no,
java.lang.String type,
java.util.Vector pkVec,
java.util.Map nVec)
Instantiates a new residue. |
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Residue(int no,
java.lang.String type,
java.util.Vector pkVec,
java.util.Vector hcVec)
Instantiates a new residue. |
Method Summary | |
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java.util.Map |
fromCB(java.lang.String type)
The atom identifiers are based on the IUPAC-IUB and X-plor For different nomenclature this functions should modified correspondingly input: residue type output: all atoms belong to one amino acid. |
java.util.Vector |
getHcchVec()
Gets the hcch vec. |
java.util.Map |
getNoeMap()
Gets the noe map. |
java.util.Vector |
getPeakVec()
Gets the peak vec. |
int |
getResidueNo()
Gets the residue no. |
java.lang.String |
getResidueType()
Gets the residue type. |
java.util.Map |
nucluesByAA(java.lang.String type)
The atom identifiers are based on the IUPAC-IUB and X-plor For different nomenclature this functions should modified correspondingly input: residue type output: all atoms belong to one amino acid. |
void |
setHcchVec(java.util.Vector vec)
Sets the hcch vec. |
void |
setPeakVec(java.util.Vector vec)
Sets the peak vec. |
void |
setResidueNo(int R)
Sets the residue no. |
void |
setResidueType(java.lang.String R)
Sets the residue type. |
java.lang.String |
toString()
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Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public Residue()
public Residue(int no)
no
- the nopublic Residue(int no, java.lang.String type)
no
- the notype
- the typepublic Residue(int no, java.lang.String type, java.util.Vector hcVec)
no
- the notype
- the typehcVec
- the hc vecpublic Residue(int no, java.lang.String type, java.util.Vector pkVec, java.util.Vector hcVec)
no
- the notype
- the typepkVec
- the pk vechcVec
- the hc vecpublic Residue(int no, java.lang.String type, java.util.Vector pkVec, java.util.Map nVec)
no
- the notype
- the typepkVec
- the pk vecnVec
- the n vecMethod Detail |
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public int getResidueNo()
public java.lang.String getResidueType()
public java.util.Vector getPeakVec()
public java.util.Vector getHcchVec()
public java.util.Map getNoeMap()
public void setResidueNo(int R)
R
- the new residue nopublic void setResidueType(java.lang.String R)
R
- the new residue typepublic void setPeakVec(java.util.Vector vec)
vec
- the new peak vecpublic void setHcchVec(java.util.Vector vec)
vec
- the new hcch vecpublic java.util.Map nucluesByAA(java.lang.String type)
type
- the type
public java.util.Map fromCB(java.lang.String type)
type
- the type
public java.lang.String toString()
toString
in class java.lang.Object
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