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H
H
- Class in
Jampack
H computes the conjugate transpose of a matrix and the transpose of a complex matrix.
H()
- Constructor for class Jampack.
H
H
- Variable in class Jampack.
Zhess
The upper Hessenberg matrix
H1CS
- Class in
RdcPanda
This class provides data structures that involve chemical shifts.
H1CS()
- Constructor for class RdcPanda.
H1CS
Instantiates a new h1 cs.
H1CS(int)
- Constructor for class RdcPanda.
H1CS
Instantiates a new h1 cs.
H1CS(int, String, String)
- Constructor for class RdcPanda.
H1CS
Instantiates a new h1 cs.
H1CS(int, String, String, double, int, int)
- Constructor for class RdcPanda.
H1CS
Instantiates a new h1 cs.
H1CS(int, String, String, double)
- Constructor for class RdcPanda.
H1CS
Instantiates a new h1 cs.
H1CS(int, String, String, double, double)
- Constructor for class RdcPanda.
H1CS
Instantiates a new h1 cs.
H1CS(int, String, String, double, double, double, double)
- Constructor for class RdcPanda.
H1CS
Instantiates a new h1 cs.
H1CS.csComparator
- Class in
RdcPanda
The Class csComparator.
H1CS.csComparator()
- Constructor for class RdcPanda.
H1CS.csComparator
H1CS.resNoComparator
- Class in
RdcPanda
The Class resNoComparator.
H1CS.resNoComparator()
- Constructor for class RdcPanda.
H1CS.resNoComparator
h1CSReader(String, Vector)
- Method in class RdcPanda.
H1CS
Read resonance list The required file format is:.
h1CSReader_BMRB(String)
- Method in class RdcPanda.
H1CS
Another method for reading chemical shifts, in BMRB format.
h1Distance(String, String, String)
- Method in class RdcPanda.
Pdb
A method to compute all the angles from ultrahigh resolution PDBs.
haCoCoords(double, double[], double[], double[])
- Method in class RdcPanda.
ModelRdc
A method for computing coordinates of backbone atoms.
haCoCoords(double, double[], double[], double[], boolean)
- Method in class RdcPanda.
ModelRdc
A method for computing coordinates of backbone atoms.
hbOfTwoStrands(Vector, String)
- Method in class RdcPanda.
Hbond
Hb of two strands.
Hbond
- Class in
RdcPanda
This class defines data structures related to h-bonds.
Hbond()
- Constructor for class RdcPanda.
Hbond
Constructors.
Hbond(int, String, int, String, String, String)
- Constructor for class RdcPanda.
Hbond
Instantiates a new hbond.
Hbond.HbondComparatorA
- Class in
RdcPanda
The Class HbondComparatorA.
Hbond.HbondComparatorA()
- Constructor for class RdcPanda.
Hbond.HbondComparatorA
Hbond.HbondComparatorB
- Class in
RdcPanda
The Class HbondComparatorB.
Hbond.HbondComparatorB()
- Constructor for class RdcPanda.
Hbond.HbondComparatorB
HbondReader(String)
- Method in class RdcPanda.
Hbond
A very simple reader for H-bond data: see the attched file for the format.
hcchReader(String)
- Method in class RdcPanda.
HcchTocsy
read peak list generated by ANSIG.
hcchReader2(String)
- Method in class RdcPanda.
HcchTocsy
Read peak list generated by NMRView.
hcchReader3(String)
- Method in class RdcPanda.
HcchTocsy
Read peak list generated by NMRView.
hcchReader4(String)
- Method in class RdcPanda.
HcchTocsy
Read the cnoe pk list generated manually.
HcchTocsy
- Class in
RdcPanda
This class defines data structures related to HcchTocsy.
HcchTocsy()
- Constructor for class RdcPanda.
HcchTocsy
Instantiates a new hcch tocsy.
HcchTocsy(int)
- Constructor for class RdcPanda.
HcchTocsy
Instantiates a new hcch tocsy.
HcchTocsy(int, String, double, double, double, double)
- Constructor for class RdcPanda.
HcchTocsy
Instantiates a new hcch tocsy.
HcchTocsy(int, String, double, double, double, double, double)
- Constructor for class RdcPanda.
HcchTocsy
Instantiates a new hcch tocsy.
HcchTocsy.c13Comparator
- Class in
RdcPanda
The Class c13Comparator.
HcchTocsy.c13Comparator()
- Constructor for class RdcPanda.
HcchTocsy.c13Comparator
HcchTocsy.h1Comparator
- Class in
RdcPanda
The Class h1Comparator.
HcchTocsy.h1Comparator()
- Constructor for class RdcPanda.
HcchTocsy.h1Comparator
HcchTocsy.haComparator
- Class in
RdcPanda
The Class haComparator.
HcchTocsy.haComparator()
- Constructor for class RdcPanda.
HcchTocsy.haComparator
HcchTocsy.resNoComparator
- Class in
RdcPanda
The Class resNoComparator.
HcchTocsy.resNoComparator()
- Constructor for class RdcPanda.
HcchTocsy.resNoComparator
Hdist
- Class in
RdcPanda
This class provides data structures related to back-computed NOE distance restraints.
Hdist()
- Constructor for class RdcPanda.
Hdist
Instantiates a new hdist.
Hdist(Cartesian)
- Constructor for class RdcPanda.
Hdist
Instantiates a new hdist.
Hdist(Cartesian, int)
- Constructor for class RdcPanda.
Hdist
Instantiates a new hdist.
Hdist(Cartesian, int, Cartesian, int)
- Constructor for class RdcPanda.
Hdist
Instantiates a new hdist.
Hdist(Cartesian, int, String, Cartesian, int, String, double)
- Constructor for class RdcPanda.
Hdist
Instantiates a new hdist.
Hdist(Cartesian, int, String, String, Cartesian, int, String, String, double)
- Constructor for class RdcPanda.
Hdist
Instantiates a new hdist.
Hdist(Cartesian, int, Cartesian, int, double)
- Constructor for class RdcPanda.
Hdist
Instantiates a new hdist.
Hdist(Cartesian, Cartesian, double)
- Constructor for class RdcPanda.
Hdist
Instantiates a new hdist.
Hncacb
- Class in
RdcPanda
This class defines data structures related to Hncacb.
Hncacb()
- Constructor for class RdcPanda.
Hncacb
Instantiates a new hncacb.
Hncacb(int)
- Constructor for class RdcPanda.
Hncacb
Instantiates a new hncacb.
Hncacb(int, int, String, double, double, double, double)
- Constructor for class RdcPanda.
Hncacb
Instantiates a new hncacb.
Hncacb.c13Comparator
- Class in
RdcPanda
The Class c13Comparator.
Hncacb.c13Comparator()
- Constructor for class RdcPanda.
Hncacb.c13Comparator
Hncacb.hnComparator
- Class in
RdcPanda
The Class hnComparator.
Hncacb.hnComparator()
- Constructor for class RdcPanda.
Hncacb.hnComparator
Hncacb.n15Comparator
- Class in
RdcPanda
The Class n15Comparator.
Hncacb.n15Comparator()
- Constructor for class RdcPanda.
Hncacb.n15Comparator
Hncacb.peakNoComparator
- Class in
RdcPanda
The Class peakNoComparator.
Hncacb.peakNoComparator()
- Constructor for class RdcPanda.
Hncacb.peakNoComparator
Hncacb.resNoComparator
- Class in
RdcPanda
The Class resNoComparator.
Hncacb.resNoComparator()
- Constructor for class RdcPanda.
Hncacb.resNoComparator
hncacbRead(String)
- Method in class RdcPanda.
Hncacb
A method for reading files with RDC restraints.
HnNoe
- Class in
RdcPanda
This class defines data structures related to N-15 labeled NOEs.
HnNoe()
- Constructor for class RdcPanda.
HnNoe
Instantiates a new hn noe.
HnNoe(int)
- Constructor for class RdcPanda.
HnNoe
Instantiates a new hn noe.
HnNoe(int, String, double, double, double, double)
- Constructor for class RdcPanda.
HnNoe
Instantiates a new hn noe.
HnNoe(int, String, double, double, double, double, double)
- Constructor for class RdcPanda.
HnNoe
Instantiates a new hn noe.
HnNoe(int, String, double, double, double, int)
- Constructor for class RdcPanda.
HnNoe
Instantiates a new hn noe.
HnNoe(int, String, double, double, double, double, Map)
- Constructor for class RdcPanda.
HnNoe
Instantiates a new hn noe.
HnNoe(double, double, double)
- Constructor for class RdcPanda.
HnNoe
Instantiates a new hn noe.
HnNoe.h1Comparator
- Class in
RdcPanda
The Class h1Comparator.
HnNoe.h1Comparator()
- Constructor for class RdcPanda.
HnNoe.h1Comparator
HnNoe.hnComparator
- Class in
RdcPanda
The Class hnComparator.
HnNoe.hnComparator()
- Constructor for class RdcPanda.
HnNoe.hnComparator
HnNoe.n15Comparator
- Class in
RdcPanda
The Class n15Comparator.
HnNoe.n15Comparator()
- Constructor for class RdcPanda.
HnNoe.n15Comparator
HnNoe.resNoComparator
- Class in
RdcPanda
The Class resNoComparator.
HnNoe.resNoComparator()
- Constructor for class RdcPanda.
HnNoe.resNoComparator
hnNoeReader(String)
- Method in class RdcPanda.
HnNoe
A method for reading NOE files The required file format is:.
hnNoeReader2(String)
- Method in class RdcPanda.
HnNoe
Another method for reading NOE files The required file format is:.
House
- Class in
Jampack
House provides static methods to generate and apply Householder transformations.
House()
- Constructor for class Jampack.
House
Hsqc
- Class in
RdcPanda
This class defines data structures related to HSQC peaks.
Hsqc()
- Constructor for class RdcPanda.
Hsqc
Instantiates a new hsqc.
Hsqc(int)
- Constructor for class RdcPanda.
Hsqc
Instantiates a new hsqc.
Hsqc(int, int, String, double, double, double)
- Constructor for class RdcPanda.
Hsqc
Instantiates a new hsqc.
Hsqc.hnComparator
- Class in
RdcPanda
The Class hnComparator.
Hsqc.hnComparator()
- Constructor for class RdcPanda.
Hsqc.hnComparator
Hsqc.n15Comparator
- Class in
RdcPanda
The Class n15Comparator.
Hsqc.n15Comparator()
- Constructor for class RdcPanda.
Hsqc.n15Comparator
Hsqc.peakNoComparator
- Class in
RdcPanda
The Class peakNoComparator.
Hsqc.peakNoComparator()
- Constructor for class RdcPanda.
Hsqc.peakNoComparator
Hsqc.resNoComparator
- Class in
RdcPanda
The Class resNoComparator.
Hsqc.resNoComparator()
- Constructor for class RdcPanda.
Hsqc.resNoComparator
hsqcRead(String)
- Method in class RdcPanda.
Hsqc
A method for reading files with RDC restraints.
hsqcReader2(String)
- Method in class RdcPanda.
Hsqc
A method for reading files with RDC restraints.
hsqcReader3(String)
- Method in class RdcPanda.
Hsqc
Hsqc reader3.
hypot(double, double)
- Static method in class RdcPanda.
Maths
sqrt(a^2 + b^2) without under/overflow.
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