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T

T - Variable in class Jampack.Schur
The upper triangular matrix.
talosAngleReader(String) - Method in class RdcPanda.PhiPsi
A very simple reader for talos angle.
testDirCaCa() - Method in class RdcPanda.PhiPsi
Test dir ca ca.
testNOEs() - Method in class RdcPanda.PhiPsi
Testing the methods for computing the \phi and \psi angle from NOE disances.
testPhiPsiByCa(Vector) - Method in class RdcPanda.PhiPsi
Test phi psi by ca.
tetrahedral(double[], Matrix, sp3Carbon) - Method in class RdcPanda.sp3Carbon
Compute the coordinates of sp3 atoms from a sp3Carbon object.
Times - Class in Jampack
 
Times() - Constructor for class Jampack.Times
 
Times(Z, Z) - Method in class Jampack.Z
Computes the product of two Z's.
Times(double, Z) - Method in class Jampack.Z
Computes the product of a double and a Z.
Times(int, Z) - Method in class Jampack.Z1
Multiplies the ith element of a Z1 by a Z.
times(double) - Method in class RdcPanda.Matrix
Multiply a matrix by a scalar, C = s*A.
times(Matrix) - Method in class RdcPanda.Matrix
Linear algebraic matrix multiplication, A * B.
times(double[]) - Method in class RdcPanda.Matrix
Times.
toString() - Method in class RdcPanda.Assign
 
toString() - Method in class RdcPanda.Cartesian
 
toString() - Method in class RdcPanda.Dipolar
 
toString() - Method in class RdcPanda.Hbond
 
toString() - Method in class RdcPanda.HcchTocsy
 
toString() - Method in class RdcPanda.Hncacb
 
toString() - Method in class RdcPanda.HnNoe
 
toString() - Method in class RdcPanda.Hsqc
 
toString() - Method in class RdcPanda.IDof2aryStructure
 
toString() - Method in class RdcPanda.ModelRdc
 
toString() - Method in class RdcPanda.Noe
 
toString() - Method in class RdcPanda.Pdb
 
toString() - Method in class RdcPanda.Peak
 
toString() - Method in class RdcPanda.PhiPsi
 
toString() - Method in class RdcPanda.Residue
 
toString() - Method in class RdcPanda.sp3Carbon
 
trace() - Method in class RdcPanda.Matrix
Trace.
TranRotGridSearch(double[], double[], double[], double[], Vector<Pdb>, double, double, boolean, double[], double[]) - Method in class RdcPanda.Goal
search T(3)*S(3) space to find the optimal solution that best fits the NOESY data
TranRotGridSearchNew(double[], double[], double[], double[], double[], int, int, int, Vector<RotaPattern>) - Method in class RdcPanda.Goal
search T(3)*S(3) space to find the optimal solution that best fits the NOESY data Use euler angle rather than grid points.
trans(Zmat) - Static method in class Jampack.H
Returns the transpose of a Zmat.
transpose() - Method in class RdcPanda.Matrix
Matrix transpose.
turnByCaCa(Vector, Vector, Vector, Vector, Vector, Vector, double, double, int, int, double, double) - Method in class RdcPanda.PhiPsi
Compute the turns (8 - 11) by randomly changing the.

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