Hierarchy For Package edu.duke.cs.osprey.sofea

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • edu.duke.cs.osprey.confspace.AbstractTupleMatrix<T> (implements java.io.Serializable, edu.duke.cs.osprey.confspace.TupleMatrix<T>)
    • edu.duke.cs.osprey.confspace.TupleMatrixGeneric<T>
      • edu.duke.cs.osprey.sofea.ZMatrix
  • edu.duke.cs.osprey.sofea.BigDecimalIO.Fixed (implements edu.duke.cs.osprey.sofea.BigDecimalIO)
  • edu.duke.cs.osprey.sofea.BigDecimalIO.Variable (implements edu.duke.cs.osprey.sofea.BigDecimalIO)
  • edu.duke.cs.osprey.sofea.BoltzmannLute
  • edu.duke.cs.osprey.sofea.FringeDB (implements java.lang.AutoCloseable)
  • edu.duke.cs.osprey.sofea.FringeDB.Transaction
  • edu.duke.cs.osprey.sofea.MinLMFE (implements edu.duke.cs.osprey.sofea.Sofea.Criterion)
  • edu.duke.cs.osprey.sofea.MinLMFE.TopSequences
  • edu.duke.cs.osprey.sofea.RCDB (implements java.lang.AutoCloseable)
  • edu.duke.cs.osprey.sofea.RCDB.Table
  • edu.duke.cs.osprey.sofea.SeqDB (implements java.lang.AutoCloseable)
  • edu.duke.cs.osprey.sofea.SeqDB.SeqInfo
  • edu.duke.cs.osprey.sofea.SeqDB.Transaction
  • edu.duke.cs.osprey.sofea.SequenceLMFE (implements edu.duke.cs.osprey.sofea.Sofea.Criterion)
  • edu.duke.cs.osprey.sofea.Sofea
  • edu.duke.cs.osprey.sofea.Sofea.Builder
  • edu.duke.cs.osprey.sofea.Sofea.SeqResult
  • edu.duke.cs.osprey.sofea.Sofea.StateConfig
  • edu.duke.cs.osprey.sofea.Sofea.StateInfo
  • edu.duke.cs.osprey.sofea.StepCount (implements edu.duke.cs.osprey.sofea.Sofea.Criterion)

Interface Hierarchy

• edu.duke.cs.osprey.sofea.BigDecimalIO
• edu.duke.cs.osprey.sofea.Sofea.Criterion

Enum Class Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • edu.duke.cs.osprey.sofea.BigDecimalIO.Type
    • edu.duke.cs.osprey.sofea.Sofea.Criterion.Filter
    • edu.duke.cs.osprey.sofea.Sofea.Criterion.Satisfied