Package edu.duke.cs.osprey.plug

Class RCTuplePolytope

java.lang.Object

edu.duke.cs.osprey.plug.RCTuplePolytope

All Implemented Interfaces:

Serializable

public class RCTuplePolytope
extends Object
implements Serializable

Polytope for a particular set of DOFs, representing the feasible region for an RC tuple

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
RCTuplePolytope(ArrayList<DegreeOfFreedom> DOFs, ArrayList<org.apache.commons.math3.optim.linear.LinearConstraint> constr)

Method Summary

Modifier and Type	Method	Description
void	checkDOFList(ArrayList<DegreeOfFreedom> checkDOFs)
boolean	containsPoint(double[] pt)
ArrayList<String>	getAtomPairNames()
ArrayList<org.apache.commons.math3.optim.linear.LinearConstraint>	getConstr()
ArrayList<DegreeOfFreedom>	getDOFs()
boolean	hasNonBoxConstr()
void	listClashes(double[] pt)
static ArrayList<org.apache.commons.math3.optim.linear.LinearConstraint>	transferConstraints(ArrayList<DegreeOfFreedom> oldDOFs, ArrayList<? extends DegreeOfFreedom> newDOFs, ArrayList<org.apache.commons.math3.optim.linear.LinearConstraint> oldConstr)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

RCTuplePolytope

public RCTuplePolytope(ArrayList<DegreeOfFreedom> DOFs,
 ArrayList<org.apache.commons.math3.optim.linear.LinearConstraint> constr)

Method Details

transferConstraints

public static ArrayList<org.apache.commons.math3.optim.linear.LinearConstraint> transferConstraints(ArrayList<DegreeOfFreedom> oldDOFs,
 ArrayList<? extends DegreeOfFreedom> newDOFs,
 ArrayList<org.apache.commons.math3.optim.linear.LinearConstraint> oldConstr)

checkDOFList

public void checkDOFList(ArrayList<DegreeOfFreedom> checkDOFs)

containsPoint

public boolean containsPoint(double[] pt)

listClashes

public void listClashes(double[] pt)

getConstr

public ArrayList<org.apache.commons.math3.optim.linear.LinearConstraint> getConstr()

hasNonBoxConstr

public boolean hasNonBoxConstr()

getAtomPairNames

public ArrayList<String> getAtomPairNames()

getDOFs

public ArrayList<DegreeOfFreedom> getDOFs()