Package edu.duke.cs.osprey.kstar

Class KStar.Settings

java.lang.Object

edu.duke.cs.osprey.kstar.KStar.Settings

Enclosing class:

KStar

public static class KStar.Settings
extends Object

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	KStar.Settings.Builder

Field Summary

Fields

Modifier and Type	Field	Description
final String	confDBPattern
final double	epsilon
final int	maxSimultaneousMutations
final Duration	pfuncTimeout
final boolean	resume
final KStarScoreWriter.Writers	scoreWriters
final boolean	showPfuncProgress
final Double	stabilityThreshold
final boolean	useExternalMemory

Constructor Summary

Constructors

Constructor	Description
Settings(double epsilon, Double stabilityThreshold, int maxSimultaneousMutations, KStarScoreWriter.Writers scoreWriters, boolean dumpPfuncConfs, boolean useExternalMemory, String confDBPattern, boolean resume, int maxNumberConfs, Duration pfuncTimeout)

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

epsilon

public final double epsilon

stabilityThreshold

public final Double stabilityThreshold

maxSimultaneousMutations

public final int maxSimultaneousMutations

scoreWriters

public final KStarScoreWriter.Writers scoreWriters

showPfuncProgress

public final boolean showPfuncProgress

useExternalMemory

public final boolean useExternalMemory

confDBPattern

public final String confDBPattern

resume

public final boolean resume

pfuncTimeout

public final Duration pfuncTimeout

Constructor Details

Settings

public Settings(double epsilon,
 Double stabilityThreshold,
 int maxSimultaneousMutations,
 KStarScoreWriter.Writers scoreWriters,
 boolean dumpPfuncConfs,
 boolean useExternalMemory,
 String confDBPattern,
 boolean resume,
 int maxNumberConfs,
 Duration pfuncTimeout)