Package edu.duke.cs.osprey.confspace

Class TupleEnumerator

java.lang.Object

edu.duke.cs.osprey.confspace.TupleEnumerator

public class TupleEnumerator
extends Object

Constructor Summary

Constructors

Constructor	Description
TupleEnumerator(PruningMatrix pruneMat, EnergyMatrix emat, int numPosTotal)

Method Summary

Modifier and Type	Method	Description
ArrayList<ArrayList<Integer>>	allPositionTuples(int numPosInTuple)
ArrayList<RCTuple>	clique2PairTriples(int numTriplesPerType)
ArrayList<RCTuple>	enumerateUnprunedTuples(int numPosInTuple)
ArrayList<RCTuple>	enumerateUnprunedTuples(ArrayList<ArrayList<Integer>> posTupleCand)
EnergyMatrix	getEmat()
void	setEmat(EnergyMatrix emat)
boolean[][]	strongInteractingPairs(int numPartners)
ArrayList<ArrayList<Integer>>	topPositionTriples(int numPartners)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

TupleEnumerator

public TupleEnumerator(PruningMatrix pruneMat,
 EnergyMatrix emat,
 int numPosTotal)

Method Details

enumerateUnprunedTuples

public ArrayList<RCTuple> enumerateUnprunedTuples(int numPosInTuple)

enumerateUnprunedTuples

public ArrayList<RCTuple> enumerateUnprunedTuples(ArrayList<ArrayList<Integer>> posTupleCand)

allPositionTuples

public ArrayList<ArrayList<Integer>> allPositionTuples(int numPosInTuple)

topPositionTriples

public ArrayList<ArrayList<Integer>> topPositionTriples(int numPartners)

strongInteractingPairs

public boolean[][] strongInteractingPairs(int numPartners)

clique2PairTriples

public ArrayList<RCTuple> clique2PairTriples(int numTriplesPerType)

getEmat

public EnergyMatrix getEmat()

setEmat

public void setEmat(EnergyMatrix emat)