Package edu.duke.cs.osprey.confspace

Class Sequence.Assignment

java.lang.Object

edu.duke.cs.osprey.confspace.Sequence.Assignment

Enclosing class:

Sequence

public class Sequence.Assignment
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
final SeqSpace.Position	pos

Method Summary

Modifier and Type	Method	Description
String	getResNum()	Get the residue number to which this assignment refers
SeqSpace.ResType	getResType()	Get the residue type of this assignment, or null if none
SeqSpace.ResType	getWildType()	Get the residue type of the wild-type at the residue of this assignment.
boolean	isAssigned()	Return true if this residue is assigned
boolean	isMutated()	Return true if this residue is assigned and differs from the wild-type.
boolean	isWildType()	Return true if this residue is assigned and matches the wild-type.
void	setResType(String resType)	Set the residue type of this assignment.
void	setWildType()	Set the residue type of this assignment to the wild-type.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

pos

public final SeqSpace.Position pos

Method Details

getResNum

public String getResNum()

Get the residue number to which this assignment refers

getResType

public SeqSpace.ResType getResType()

Get the residue type of this assignment, or null if none

setResType

public void setResType(String resType)

Set the residue type of this assignment.

getWildType

public SeqSpace.ResType getWildType()

Get the residue type of the wild-type at the residue of this assignment.

setWildType

public void setWildType()

Set the residue type of this assignment to the wild-type.

isAssigned

public boolean isAssigned()

Return true if this residue is assigned

isWildType

public boolean isWildType()

Return true if this residue is assigned and matches the wild-type.

isMutated

public boolean isMutated()

Return true if this residue is assigned and differs from the wild-type.