Package edu.duke.cs.osprey.coffee.nodedb

Class NodeIndex

java.lang.Object

edu.duke.cs.osprey.coffee.nodedb.NodeIndex

public class NodeIndex
extends Object

A specialization of FixedIndex for COFFEE nodes.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	NodeIndex.Node

Field Summary

Fields

Modifier and Type	Field	Description
final MultiStateConfSpace.State	state
final BlockStore	store

Constructor Summary

Constructors

Constructor	Description
NodeIndex(BlockStore store, MultiStateConfSpace.State state)

Method Summary

Modifier and Type	Method	Description
boolean	add(NodeIndex.Node node)
void	clear()
Deque<NodeIndex.Node>	dropped()
long	freeSpace()
void	freeUpSpace()
BigExp	highestScore()
protected int	nodesPerBlock()
NodeIndex.Node	removeHighest()
long	size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

store

public final BlockStore store

state

public final MultiStateConfSpace.State state

Constructor Details

NodeIndex

public NodeIndex(BlockStore store,
 MultiStateConfSpace.State state)

Method Details

nodesPerBlock

protected int nodesPerBlock()

size

public long size()

freeSpace

public long freeSpace()

add

public boolean add(NodeIndex.Node node)

highestScore

public BigExp highestScore()

removeHighest

public NodeIndex.Node removeHighest()

freeUpSpace

public void freeUpSpace()

dropped

public Deque<NodeIndex.Node> dropped()

clear

public void clear()