Package edu.duke.cs.osprey.sofea

Class Sofea.StateConfig

java.lang.Object

edu.duke.cs.osprey.sofea.Sofea.StateConfig

Enclosing class:

Sofea

public static class Sofea.StateConfig
extends Object

Per-state configuration needed to run SOFEA.

Field Summary

Fields

Modifier and Type	Field	Description
final File	confDBFile	File to cache conformation energies.
final ConfEnergyCalculator	confEcalc	A tool to compute energies for conformations.
final EnergyMatrix	emat	An energy matrix of lower energy bounds on RC tuples.

Constructor Summary

Constructors

Constructor	Description
StateConfig(EnergyMatrix emat, ConfEnergyCalculator confEcalc, File confDBFile)

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

emat

public final EnergyMatrix emat

An energy matrix of lower energy bounds on RC tuples.

confEcalc

public final ConfEnergyCalculator confEcalc

A tool to compute energies for conformations.

confDBFile

public final File confDBFile

File to cache conformation energies. Optional, can be null.

Constructor Details

StateConfig

public StateConfig(EnergyMatrix emat,
 ConfEnergyCalculator confEcalc,
 File confDBFile)