Package edu.duke.cs.osprey.confspace

Class VoxelShape

java.lang.Object

edu.duke.cs.osprey.confspace.VoxelShape

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

VoxelShape.Point, VoxelShape.Rect

public abstract class VoxelShape
extends Object
implements Serializable

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	VoxelShape.Point
static class	VoxelShape.Rect

Field Summary

Fields

Modifier and Type	Field	Description
static final double	DefaultHalfWidthDegrees

Constructor Summary

Constructors

Constructor	Description
VoxelShape()

Method Summary

Modifier and Type	Method	Description
abstract int	countDihedralDOFs(ResidueTemplate template)
abstract SimpleConfSpace.DofTypes	getDofTypes()
abstract ObjectiveFunction.DofBounds	makeDihedralBounds(ResidueTemplate template, int rotamerIndex)	make bounds for degrees of freedom for the residue in its current state (ie, ignore possible mutations)
abstract List<DegreeOfFreedom>	makeDihedralDOFs(Residue res)	make degrees of freedom for the residue in its current state (ie, ignore possible mutations)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

DefaultHalfWidthDegrees

public static final double DefaultHalfWidthDegrees

See Also:

• Constant Field Values

Constructor Details

VoxelShape

public VoxelShape()

Method Details

countDihedralDOFs

public abstract int countDihedralDOFs(ResidueTemplate template)

makeDihedralDOFs

public abstract List<DegreeOfFreedom> makeDihedralDOFs(Residue res)

make degrees of freedom for the residue in its current state (ie, ignore possible mutations)

makeDihedralBounds

public abstract ObjectiveFunction.DofBounds makeDihedralBounds(ResidueTemplate template,
 int rotamerIndex)

make bounds for degrees of freedom for the residue in its current state (ie, ignore possible mutations)

getDofTypes

public abstract SimpleConfSpace.DofTypes getDofTypes()